You know that moment when you take a bite of something and it just feels like a hug? That's exactly what happened the first time I made these apple crumble cupcakes. I was trying to recreate my grandma's famous apple pie in cupcake form for a bake sale, and somehow, this magical hybrid was born—moist vanilla cupcakes stuffed with warm spiced apples and topped with buttery crumble that crackles under your teeth. It's like autumn in dessert form, but honestly? I make them year-round because they're just that good.
These little guys are perfect for when you want something cozy but don't feel like committing to a whole pie. In about 45 minutes (yes, really!), you'll have a dozen cupcakes that smell like heaven and disappear even faster. The vanilla base stays super tender thanks to sour cream, the apple filling gets all jammy while baking, and that crumble topping—oh, that crumble! It's the kind of dessert that makes people ask for the recipe before they've even finished chewing.
Why You’ll Love Apple Crumble Cupcakes
Okay, let me count the ways these cupcakes will steal your heart (and probably your willpower):
- They’re pie and cake’s lovechild: All the cozy apple pie vibes, but portable and way less fuss than rolling out crust. Win-win.
- That crumble topping is everything: It’s like the best part of a coffee cake got a crunchy, cinnamon-y glow-up. You’ll catch yourself picking off bits straight from the pan—I won’t judge.
- Secretly easy: No fancy techniques here. If you can stir apples and sprinkle crumbs, you’re golden. Even my butterfingers nephew manages these!
- Leftovers? Ha! Good luck with that. But seriously, they stay moist for days (if hidden well).
- Instant crowd-pleaser: Bring these to book club, potlucks, or “I just need dessert” nights. Watch them vanish while people lick crumbs off their fingers.
Trust me, once you’ve had one warm from the oven, with that caramelized apple middle? You’ll be hooked.
Ingredients You’ll Need for Apple Crumble Cupcakes
For the Crumble Topping
This is where the magic happens—don’t skip the crumble! The key is keeping everything cold so it stays nice and crunchy. You’ll need:
- 1 cup all-purpose flour – Spoon and level it, don’t pack it down.
- ½ cup packed light brown sugar – Dark brown works too for deeper flavor.
- ½ teaspoon ground cinnamon + ¼ teaspoon nutmeg – Warm spices = cozy vibes.
- ½ cup cold unsalted butter, cubed – Seriously cold. I pop it in the freezer for 10 minutes first.
For the Apple Filling
Use firm, sweet apples—they hold their shape better when baked. My go-tos:
- 3 medium Honeycrisp, Gala, or Fuji apples – Peeled, cored, and diced small (about 2 cups).
- 2 tablespoon granulated sugar – Just enough to sweeten without making it syrupy.
- 1 tablespoon lemon juice – Keeps the apples bright and adds a little zing.
- 1 teaspoon cinnamon + ¼ teaspoon nutmeg – Because apples love spice.
- 1 tablespoon flour – Thickens the juices so they don’t make the cupcakes soggy.
For the Cupcakes
The sour cream here is my secret weapon—super moist every time:
- 1½ cups all-purpose flour
- 1½ teaspoon baking powder + ¼ teaspoon baking soda – For the perfect rise.
- ¼ teaspoon salt – Balances the sweetness.
- ½ cup unsalted butter, softened – Room temp = creamy batter.
- ¾ cup granulated sugar
- 2 large eggs – Crack ’em right into the bowl.
- 1 teaspoon vanilla extract – The good stuff, please.
- ½ cup sour cream or plain yogurt – Either works! Full-fat = best texture.
- ¼ cup milk – Any kind, even dairy-free.
Step-by-Step Instructions for Apple Crumble Cupcakes
Preheat and Prepare
First things first—fire up that oven to 350°F (175°C). While it's heating, line a muffin tin with your favorite cupcake liners. Pro tip: If you want extra-easy cleanup, give the liners a quick spritz with baking spray. Those apple bits like to stick sometimes!
Make the Crumble Topping
Grab a medium bowl and toss in the flour, brown sugar, cinnamon, and nutmeg. Now for the fun part—take your ice-cold butter cubes and work them into the dry mix with your fingers or a pastry cutter. You're aiming for pea-sized crumbs with some bigger chunks for texture. Pop the bowl in the fridge while you work on the rest—this keeps the butter firm so your topping stays crisp.
Prepare the Apple Filling
In another bowl, dump your diced apples (don't worry if they're not perfect!), sugar, lemon juice, spices, and flour. Toss it all together until every piece is coated. The flour might look dusty at first, but it'll dissolve into a glossy glaze as the apples bake. Set this aside—the sugar will start drawing out juices, making the filling extra flavorful.
Make the Cupcake Batter
Whisk the flour, baking powder, baking soda, and salt in one bowl. In a bigger bowl, beat the softened butter and sugar until it's light and fluffy—about 2 minutes with a hand mixer. Crack in the eggs one at a time, then splash in the vanilla. Now alternate adding the dry ingredients with the sour cream and milk, mixing just until combined. The batter will be thick but pourable—if it seems stiff, add another tablespoon of milk.
Assemble and Bake
Here's where the magic happens! Fill each liner halfway with batter. Drop a heaping teaspoon of apple filling in the center (a little juice is fine!), then cover with more batter until about ¾ full. Generously sprinkle that crumble on top—pack it on, because some will settle during baking. Bake for 18-22 minutes until the tops spring back when touched. Let them cool in the pan for 5 minutes (this stops the crumble from crumbling everywhere!), then transfer to a wire rack. Resist eating immediately unless you enjoy molten apple lava burns!

Variations for Apple Crumble Cupcakes
Listen, I love the classic version, but sometimes you gotta mix it up—especially when apples are looking sad at the store or you're feeling adventurous. Here are my favorite twists:
- Berry swap: Replace half the apples with frozen (thawed!) blueberries or raspberries. The tartness cuts through the sweetness beautifully.
- Nutty crumble: Toss ¼ cup chopped pecans or walnuts into the topping mix. Toast them first for extra flavor—you won’t regret it.
- Caramel drizzle: Warm up store-bought caramel sauce and zigzag it over the cooled cupcakes. Instant fancy!
- Spice it up: Add a pinch of cardamom or ginger to the apple filling for a little kick.
- Pear instead: Super ripe pears work just as well as apples—just reduce the sugar slightly since they’re sweeter.
The best part? You can mix and match these ideas. Last Thanksgiving I did pecans + caramel and they disappeared before the turkey even came out of the oven!
Serving and Storage Tips for Apple Crumble Cupcakes
Okay, real talk—these cupcakes are best served still slightly warm, when the crumble is crisp and the apple filling is all gooey. Just give them about 10 minutes to cool after baking so you don’t burn your tongue! If they’ve cooled completely, no worries—a quick 10-second zap in the microwave brings back that fresh-from-the-oven magic. Want to go full dessert mode? Top with a scoop of vanilla ice cream and watch it melt into the crumble. Heaven.
For storage, keep them in an airtight container at room temp for up to 2 days (if they last that long!). The crumble softens a bit over time, but they’ll still taste amazing. If you need to store them longer, freeze the unfrosted cupcakes in a single layer, then transfer to a freezer bag for up to a month. Thaw at room temp or reheat at 300°F for 5 minutes to revive the crunch. Pro tip: Hide a few in the back of the freezer for emergency dessert cravings—you’ll thank me later.
Helpful Notes for Apple Crumble Cupcakes
A few little tricks I’ve picked up while making these over and over (because, let’s be honest, I make them way too often):
- Butter temperature matters! For the crumble topping, cold butter = crispy texture. If it starts melting while you’re working, just pop the bowl in the fridge for 5 minutes.
- Apples are forgiving: No need to stress about perfect dicing—bigger chunks give bursts of flavor, smaller ones blend in more. Just avoid super juicy varieties like Red Delicious (they get mushy).
- Cooling is key: Let cupcakes cool completely before storing, or the steam makes the crumble soggy. I prop a wooden spoon under the container lid for airflow if I’m in a hurry.
- Dairy swaps: Use coconut yogurt and almond milk for a dairy-free version—it works surprisingly well! The crumble just won’t brown quite as much.
Nutrition-wise, these aren’t health food (obviously!), but using less sugar in the filling and whole wheat flour for half the cupcake flour can make them a smidge healthier without sacrificing taste. But hey—sometimes you just need that buttery crumble, right?
Frequently Asked Questions About Apple Crumble Cupcakes
I get it—baking can bring up a million little questions! Here are answers to the ones I hear most about these cupcakes:
- Can I use Greek yogurt instead of sour cream?
Absolutely! Plain Greek yogurt works just as well—it might even make the cupcakes a tad lighter. Just avoid flavored yogurts unless you want surprise vanilla-apple cupcakes. - How do I know when they’re done baking?
The crumble should look golden, and a toothpick poked into the cake part (not the apple filling!) should come out clean. If the tops are browning too fast, tent loosely with foil. - Can I double this recipe?
Yes! Just use two muffin tins and rotate them halfway through baking. The crumble topping might need mixing in two batches to keep the butter cold. - Why did my apple filling sink?
If you overfill the liners or the batter’s too thin, the apples can drop. Stick to ¾ full max, and make sure your batter’s thick enough to support the filling. - Can I make these gluten-free?
Swap the flour for a 1:1 gluten-free blend. The texture changes slightly, but they’re still delicious—just bake a minute or two longer.
Still stumped? Shoot me a message—I’ve probably made every mistake possible with these cupcakes already!
Final Thoughts on Apple Crumble Cupcakes
If you’ve made it this far, I already know you’re going to love these cupcakes as much as I do. They’re the perfect little package—soft vanilla cake, pockets of spiced apples, and that irresistible crumble topping that makes you close your eyes and sigh after the first bite. Seriously, they’re like a cozy sweater for your taste buds.
What I love most is how they bridge the gap between fancy and fuss-free. They look impressive enough for special occasions but are simple enough for a lazy Sunday baking session. And let’s be real—anything that lets you eat pie and cake simultaneously is a win in my book.
So grab those apples and get mixing! Whether it’s for a party, a treat-yourself moment, or just because you deserve something delicious, these cupcakes won’t disappoint. Just maybe double the batch—trust me, you’ll want seconds.

Apple Crumble Cupcakes
Equipment
- muffin tin
- mixing bowls
Ingredients
For the Crumble Topping
- 1 cup all-purpose flour
- ½ cup packed light brown sugar
- ½ teaspoon ground cinnamon
- ¼ teaspoon ground nutmeg
- ½ cup cold unsalted butter cut into small cubes
For the Apple Filling
- 3 medium apples peeled, cored, and diced (such as Honeycrisp, Gala, or Fuji)
- 2 tablespoon granulated sugar
- 1 tablespoon lemon juice
- 1 teaspoon ground cinnamon
- ¼ teaspoon ground nutmeg
- 1 tablespoon all-purpose flour
For the Cupcakes
- 1 ½ cups all-purpose flour
- 1 ½ teaspoon baking powder
- ¼ teaspoon baking soda
- ¼ teaspoon salt
- ½ cup unsalted butter softened
- ¾ cup granulated sugar
- 2 large eggs
- 1 teaspoon vanilla extract
- ½ cup sour cream or plain yogurt
- ¼ cup milk
Instructions
- Preheat oven to 350°F (175°C). Line a muffin tin with cupcake liners.
- Make the crumble topping: Mix flour, brown sugar, cinnamon, and nutmeg in a bowl. Cut in butter until mixture resembles coarse crumbs. Refrigerate until needed.
- Prepare the apple filling: Toss diced apples with sugar, lemon juice, cinnamon, nutmeg, and flour until evenly coated.
- Make the cupcake batter: Whisk flour, baking powder, baking soda, and salt in a bowl. In another bowl, beat butter and sugar until light. Add eggs one at a time, then vanilla. Alternate adding dry ingredients with sour cream and milk.
- Fill cupcake liners halfway with batter. Add a spoonful of apple filling to each, then top with remaining batter. Sprinkle crumble topping generously over each.
- Bake for 18-22 minutes until a toothpick comes out clean. Cool in pan for 5 minutes, then transfer to a wire rack.






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